The utility of suzuki-miyaura cross-coupling reaction in the synthesis of angular benzo[a]phenothiazine and benzo[a]phenoxazine derivatives and their anti-microbial screening | Blazingprojects Postgraduate Thesis
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The utility of suzuki-miyaura cross-coupling reaction in the synthesis of angular benzo[a]phenothiazine and benzo[a]phenoxazine derivatives and their anti-microbial screening

 

Table Of Contents


  • Title page – – – – – – – – – – – i Certification – – – – – – – – – – – ii Dedication – – – – – – – – – – – iii Acknowledgement – – – – – – – – – – iv Abstract – – – – – – – – – – – v Table of Contents – – – – – – – – – – vi List of Figures – – – – – – – – – – – viii List of Tables – – – – – – – – – – – x Abbreviations – – – – – – – – – – – xi

Chapter ONE

INTRODUCTION

  • 1.0Introduction – – – – – – – – – – 1
  • 1.1Background of study – – – – – – – — – 1
  • 1.2Statement of problem – – – – – – – – – – 2
  • 1.3Objectives of study – – – – – – – – – – 2
  • 1.4Justification of study – – – – – – – – – 3

Chapter TWO

LITERATURE REVIEW

  • 2.0Literature Review – – – – – – – – – – 4
  • 2.1Angular Phenothiazines – – – – – – – – – 4
  • 2.2Aza-Analogues of angular Phenothiazines – – – – – – – 8
  • 2.3Angular Phenoxazines – – – – – – – – – – 12
  • 2.4Aza-Analogues of Angular Phenoxazines – — – – – – 18
  • 2.5Suzuki-Miyaura Cross Coupling Reaction – – — – – – – 25

Chapter THREE

RESEARCH METHODOLOGY

  • 3.0Experimental Section – – – – – – – – – 53 vii
  • 3.1Materials and Method – – – – – – – – 53
  • 3.2Synthesis of Angular Phenothiazine and Phenoxazine Intermediates – – 53 3.
  • 2.16-chloro-5H-benzo[a]phenothiazin-5-one – – – – – – 53 3.
  • 2.211-amino-6-chloro-9-mercapto-5H-naphtho[2,1-b]pyrimido[5,4-e][1,4]oxazin-5-one 54 3.
  • 2.36-chloro-5H-naphtho[2,1-b]pyrido[2,3-e][1,4]oxazin-5-one – – – – 55
  • 3.3The General Procedure for Suzuki Cross-Coupling Reactions – – – – 55 3.
  • 3.2Synthesis of Derivatives of 6-chloro-5H-benzo[a]phenothiazin-5-one – – 56 3.3.
  • 2.16-phenyl-5H-benzo[a]phenothiazin-5-one – – – – – – 56 3.3.
  • 3.26-(3-nitrophenyl)-5H-benzo[a]phenothiazin-5-one, – – – – – 56 3.
  • 3.3Synthesis of Derivative of 11-amino-6-chloro-9-mercapto-5H-naphtho[2,1-b]pyrimido [5,4- e][1,4]oxazin-5-one – – – – – – – – – 57 3.3.
  • 3.111-amino-9-mercapto-6-phenyl-5H-naphtho[2,1-b]pyrimido[5,4-e][1,4]oxazin-5-one – 57 3.3.
  • 3.211-amino-9-mercapto-6-(3-nitrophenyl)-5H-naphtho[2,1-b]pyrimido[5,4-e][1,4] oxazin-5-one- – – – – – – – – 57 3.
  • 3.4Synthesis of the Derivatives of 6-chloro-5H-naphtho[2,1-b]pyrido[2,3-e][1,4]oxazin-5-one 58 3.3.
  • 4.16-phenyl-5H-naphtho[2,1-b]pyrido[2,3-e][1,4]oxazin-5-one – – – – 58 3.3.
  • 4.26-(3-nitrophenyl)-5H-naphtho[2,1-b]pyrido[2,3-e][1,4]oxazin-5-one – – – 59
  • 3.4Antimicrobial Screening – – – – – – – – – 59 3.
  • 4.1General Sensitivity Testing of Compounds – – – – – – 60 3.
  • 4.2Minimum Inhibitory Concentration (MIC) testing – – – – – 60

Chapter FOUR

DATA PRESENTATION AND ANALYSIS

  • 4.0Results and discussion- – – – – – – – – 61
  • 4.1Synthesis of the intermediates – – – – – – – – 61
  • 4.2Coupled products via Suzuki cross coupling reactions – – – – – 63
  • 4.6Antimicrobial Activity Result – – – – – – – – 68

Chapter FIVE

SUMMARY, CONCLUSION AND RECOMMENDATIONS

  • 5.0Conclusion – – – – – – – – – – 73 References – – – – – – – – – – 74 Appendixes- – – – – – – – – – 90 

Thesis Abstract

Palladium-catalysed Suziki-Miyaura cross-coupling (SMC) reactions of 6-chloro-5H
benzo[a]phenothiazin-5-one, 11-amino-6-chloro-9-thio-5H-naphtho[2,1-b]pyrimido[5,4-e][1,4]
oxazin-5-one and 6-chloro-5H-naphtho[2,1-b]pyrido[2,3-e][1,4]oxazin-5-one with phenylboronic
acid and 3-nitophenylboronic acid were thoroughly investigated. The above intermediates were
prepared by the reactions of 2-aminothiophenol, 4,5-diamino-6-hydroxylpyrimidine-2-thiol and 2-
aminpyridin-3-ol respectively with 2,3-dichloronaphthalene-1,4-dione in a basic medium using
benzene/DMF as the solvent. Thereafter, each was subjected to the SMC reactions with
phenylboronic acid and 3-nitrophenyl boronic acid, refluxing for 7-8 h at 110 oC using
tris(dibenzylideneacetone)dipalladium(0) (Pd2(dba)3), SPhos, potassium phosphate (K3PO4), and
toluene as the catalyst, ligand, base and solvent correspondingly to yield 6-phenyl-5Hbenzo[
a]phenothiazin-5-one and 6-(3-nitrophenyl)-5H-benzo[a]phenothiazin-5-one;11-amino-9-
mercapto-6-phenyl-5H-naphtho[2,1-b]pyrimido[5,4-e][1,4]oxazin-5-one and 11-amino-9-
mercapto-6-(3-nitrophenyl)-5H-naphtho[2,1-b]pyrimido[5,4-e][1,4]oxazin-5-one; and 6-phenyl-
5H-naphtho[2,1-b]pyrido[2,3-e][1,4]oxazin-5-one and 6-(3-nitrophenyl)-5H-naphtho[2,1-
b]pyrido[2,3-e][1,4]oxazin-5-one. Structures of the compounds were characterized using
UV/visible spectrophotometry, FT-IR, 1H-NMR and 13C-NMR spectroscopy and elemental
analysis. Using Ciprofloxacin (antibacterial) and Ketoconazole (antifungal) as reference drugs, the
compounds were screened against six (6) micro-organisms, viz Bacillus subtitis, Staphylococcus
aureus, Pseudomonas aeruginosa, Escherichia coli, Candida albican and Aspergillus niger; and
were found to show significant activity against some gram-positive bacteria.

Thesis Overview

<p> 1.1 Background:<br>The emergence of new catalytic systems, utilizing palladacyclic complexes, electron-rich<br>trialkylphosphine ligands and the bulky biphenyl-based phosphines developed by Buchwald and<br>co-workers, 1 have virtually transformed the trend in organic synthesis. These have led to the<br>development of some novel compounds from unreactive aryl and heteroaryl chlorides that exhibit<br>strong actions against drug-resistant microbes and possess other potentials. However, the<br>applications of phenothiazine 1 and phenoxazine 2 compounds and their derivatives in drugs,<br>textile, agriculture and other related industries have long been recognized.<br>N<br>S<br>H<br>N<br>O<br>H<br>1 2<br>j<br>i<br>h<br>a<br>b<br>c<br>j<br>i<br>h<br>a<br>b<br>c<br>Phenothiazine , one of the most frequently encountered bioactive heterocycles in compounds of<br>biological interest,2 and its derivatives have been found to show tremendous biological activities<br>such as antiparkinsonian,3 anticonversant,4 antidepressant,5 neuroleptic,6 anti-inflamatory,7-9<br>antimalarial,10-12 antipsychotic,13-15 antimicrobial,16,17 anti-tubercular,18-21 antitumor,22,23<br>antihistaminic,24,25 analgesic, 26 prion disease drug27 . In textile, paint and plastic industries, they<br>are used as dyes and pigments28 and in agricultural industries as insecticides29. In petroleum<br>industries, they are used as antioxidants in lubricants and fuels30. It has been observed that some<br>phenothiazines inhibit intracellular replication of viruses including human immunodeficiency<br>2<br>viruses (HIV) 31. On the other hand, some have been reported to exhibit significant anticancer<br>activity32, 33.<br>Similarly, phenoxazine and related compounds have been reported to possess various biological<br>activities such as antiparkinsonian, 34,35 anticonvulsant,36 antihistamic,37 antihelmatic,38 antiviral,<br>39 antitumor,40 anticancer,41 antiparasitic,42 antibacterial43,44 and CNS depressant45. Other<br>applications include their use as antioxidants and biological stains,46 laser dyes,47 indicators48 and<br>especially as chromophoric compounds in host guest artificial protonic antenna system49.<br>1.2 STATEMENT OF THE PROBLEM<br>Although several synthetic routes to linear and angular phenoxazines and phenothiazines have<br>been reported50-54 methods are often not applicable for the preparation of a wide variety of their<br>derivatives with excellent yields and good pharmacological activity. Moreover, because of the<br>current indespensibility of phenothiazine and phenoxazine rings as valuable molecular templates<br>(scaffords) for the development of chemotherapeutic agents with high pharmacokinetic profile, it<br>becomes imperative to investigate elegant and facile reaction protocols to synthesized possible<br>derivatives with variety of functionalities.<br>1.3 OBJECTIVES OF THE STUDY<br>The specific objectives of this study are to:<br>i. To synthesize and characterize some benzo[a]phenothiazine and benzo[a]phenoxazine<br>compounds as intermediates.<br>ii. To convert the intermediates to their derivatives using palladium-SPhos catalyzed Suzuki<br>cross-coupling reaction.<br>iii. To characterize the synthesized compounds by spectroscopic methods (IR, UV, NMR and<br>elemental analysis).<br>iv. To screen the new compounds for antimicrobial properties.<br>3<br>1.4 JUSTIFICATION OF THE STUDY<br>The burgeoning pharmaceutical applications of phenothiazine and phenoxazine derivatives<br>stimulated us to explore facile reaction procedures for functionalization of these compounds60-70.<br>Hitherto, derivatizations of these compounds were accomplished by utilizing stoichiometric<br>reactions which are generally harsh and unfavourable to sensitive functional groups. Hence, the<br>extent of functionalization of these compounds under these conditions was limited. Although<br>various (hetero) chlorophenothiazines and chlorophenoxazines are relatively cheap and readily<br>available, their applications as coupling partners in Pd-catalyzed SMC reactions are rare.<br>Furthermore, since the discovery of monodendate, bulky and electron-rich<br>dialkylbiphenylphosphine ligands (of which SPhos is a part) used for cross-coupling of<br>electronically and/or sterically derived aryl chlorides and other substrates,66-68 none of them has<br>been tested on chlorophenothiazine and chlorophenoxazine. Our choice of SPhos is based on its<br>electronic and steric properties because it increases the electron density around palladium metal<br>and accelerates the oxidative addition of the substrate to the catalyst while its bulkiness and large<br>cone angle would accelerate the rate of reductive elimination68. Moreover, we chose Suzuki-<br>Miyaura protocol because of its so many advantages. Ultimately, the practicability of the<br>developed protocol was demonstrated in the synthesis of a total of six derivatives. Besides, to our<br>knowledge, these procedures were previously unknown and the synthesized compounds are new.<br>4 <br></p>

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