O-arylation of angular diazaphenoxazine and related carbocyclic analogue using buchwald catalyst | Blazingprojects Postgraduate Thesis
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O-arylation of angular diazaphenoxazine and related carbocyclic analogue using buchwald catalyst

 

Table Of Contents


Chapter ONE

INTRODUCTION

  • 1.0INTRODUCTION 1
  • 1.1BACKGROUND OF STUDY 1
  • 1.2Statement of problem 9
  • 1.3Objectives of the study 10
  • 1.4Justification for the study 11

Chapter TWO

LITERATURE REVIEW

  • 2.0LITERATURE REVIEW 12
  • 2.1Buchwald-Hartwig C–O Coupling Reactions 12
  • 2.2Mechanism of Buchwald-Hartwig C-O coupling reactions 22
  • 2.3Factors influencing the performance of a given C-O coupling reactions 24
  • 2.4Angular phenoxazines 35 2.
  • 4.1Benzophenoxazine ring system 35 2.
  • 4.2Dibenzophenoxazine ring system 38 2.
  • 4.3Aza analogues of benzo[a]phenoxazines 42
  • 2.5Applications of angular phenoxazines 47

Chapter THREE

RESEARCH METHODOLOGY

  • 3.0EXPERIMENTAL SECTION 57 x
  • 3.1GENERAL REAGENT INFORMATION 57 3.2GENERAL ANALYTICAL INFORMATION 57 3.
  • 2.1Synthesis of 11-amino-6-chloro-9-mercapto-8,10 – diazabenzo[a]phenoxazin-5-one 3 58 3.
  • 2.2Synthesis of 6-Chlorobenzo[a]phenoxazin-5-one 26 59
  • 3.3General procedure for Pd-catalyzed coupling of angular diazabenzo[a]phenoxazine and related carbocyclic analogue with phenols 60
  • 3.4Synthesis of 9-mecapto-11-amino-6-(4-methylphenoxyl) -8,10-diazabenzo[a]phenoxazine-5-one 28a 61
  • 3.5Synthesis of 11-amino-9-mercapto-6-(phenoxyl)-8,10- diazabenzo [a]phenoxazine-5-one 28b 62
  • 3.6Synthesis of 11-amino-9-mecaptho-6-(4-chlorophenoxy) 8,10-diazabenzo[a]phenoxazin-5-one 28c 63
  • 3.7Synthesis of 11-amino-9-mercapto-6-(2-aminophenoxyl)- 8,10-diazabenzo[a]phenoxazin-5-one 28d 64
  • 3.8Synthesis of 11-amino-9-mercapto-6-(4-isopropyl phenoxy) benzo[a]phenoxazin-5-one 28e 65
  • 3.9Synthesis of 11-amino-9-mercapto-6-(naphthoxyl) benzo[a] phenoxazin-5-one 28f 66
  • 3.10Synthesis of 6-(4-methoxyl phenoxyl) benzo[a]phenoxazine xi -5-one 29a 67
  • 3.11Synthesis of 6-phenoxylbenzo[a]phenoxazin-5-one 29b 68
  • 3.12Synthesis of 6-(4-chlorophenoxyl)-benzo[a]phenoxazine-5-one 29c 69
  • 3.13Synthesis of (2-aminophenoxyl)benzo[a]phenoxazin-5-one 29d 70
  • 3.14Synthesis of 6-(4-isopropylphenoxyl)benzo[a]phenoxazin-5-one 29e 71
  • 3.15Synthesis of 6-(1-naphthoxyl)benzo[a]phenoxazine-5-one 29 f 72
  • 3.16Antimicrobial screening of the novel compounds 72
  • 3.17Determination of minimum inhibitory concentration (MIC) of the new compounds 74

Chapter FOUR

DATA PRESENTATION AND ANALYSIS

  • 4.0RESULTS AND DISCUSSION 75
  • 4.1General consideration of yield of the described products 75
  • 4.2Proposed catalytic cycle 86 4.
  • 3.UV/VIS spectroscopy results of the synthesized angular phenoxazine derivatives 89
  • 4.4Confirmation of the structures of the diazaphenoxazine and related carbocyclic anologue derivatives using IR spectroscopic data 91 4.
  • 5.NMR interpretation of angular diazaphenoxzines and related carbocyclic analogues synthesized 105 4.
  • 6.Biological activity of the novel angular diazaphenoxazine and benzophenoxazine derivatives 116 Conclusion 121 REFERENCES 122 xii APPENDIX 

Thesis Abstract

Synthesis of twelve O-arylated diazabenzo[a]phenoxazine-5-one and its
carbocyclic analogue is reported in 46 – 99 % yields. The intermediates
were prepared by anhydrous base catalyzed reaction of 2,3-dichloro-1,4-
naphthoquinone with 4,5-diamino-6-hydroxyl-2-mercaptopyrimidine and 2-
aminophenol. The O-arylation process occurred smoothly in non-polar
solvent, toluene with the inexpensive base, K2PO4 at 110oC. The
intermediates were combined with a variety of electron-deficient, electrically
neutral and electron-rich phenols in the presence of a catalyst combination of
Pd(OAc)2 and electron rich, bulky alkyldiarylphosphine ligand in which the
alkyl groups are tert-butyl (t-Buxphos), to furnish the arylated compounds.
Bulky yet basic nature of the phosphine ligand is thought to be responsible
for these transformations. The highest yields were obtained when the
intermediates coupled with electron rich phenols, with the carbocyclic
analogue giving better yields. IR, 1H NMR and 13C NMR spectra data,
confirmed the structures of all the synthesized compounds. The effect of the
synthesized compounds on bacteria and fungi growth was studied. The
studied compounds were found to be potent antibacterial and antifungal
agents as they showed significant biological activity against Escherichia
coli, Staphylococcus aureus, Bacillus subtilis, Pseudomonas aeruginosa and
Candida albicans. In addition, they may be useful as dyes in industries since
they absorb in the UV- visible region.

Thesis Overview

<p> 1.0 INTRODUCTION<br>1.1 BACKGROUND OF STUDY:<br>Angular phenoxazines are defined as the polynuclear phenoxazines that<br>have non-linear arrangement ring system1. Angular phenoxazines and its aza<br>analogues constitute important classes of organic compounds because of their<br>wide range of commercial uses. They are used as dyes1 and drugs2. They exhibit<br>strong biological activities ranging from antidepressant3, antitumour4,<br>anticancer5, antibacterial6, and antituberculosis7 and schizophrenia agents8.<br>Among the several industrial applications of angular phenoxazine derivatives are<br>their use as acid-base indicator9, biological stains10, laser dyes11 and<br>chromophoric compounds12.<br>The report of the basic structure of the parent phenoxazine 1 prompted the<br>synthesis of several hundreds of derivatives, not only to improve their usefulness<br>but also to open up new area of applications.<br>N H<br>O<br>1<br>These structural modifications have given rise to benzo[a]phenoxazine 2,<br>benzo[c]phenoxazines 3, benzo[b]phenoxazine 4, benzo[j]phenoxazine 5,<br>2<br>benzo[i]phenoxazine 6 and benzo[h]phenoxazine 710 among others. These are all<br>carbocyclic phenoxazines.<br>N H<br>O<br>2 3<br>N H<br>O<br>N H<br>O<br>N H<br>O<br>4 5<br>N H<br>O<br>6 7<br>N H O<br>Structures 4 and 6 are linear phenoxazines while structures 2, 3, and 5 are<br>angular phenoxazines.<br>Phenoxazine compounds that have two benzo groups attached to<br>phenoxazine nucleus are called dibenzophenoxazines. These include compounds<br>8, 9, and 10.<br>3<br>N H<br>O<br>8<br>N H<br>O<br>9<br>10<br>N H<br>O<br>Some of the structures of angular phenoxazines are very complex. For example<br>compounds 1114, 1215,1316 and 1417.<br>N H<br>O NH<br>O<br>N H<br>O<br>O<br>11 HN<br>12<br>4<br>N H<br>O<br>N H<br>O<br>O S O<br>ONa<br>O S O<br>ONa<br>HO<br>OH<br>X<br>13<br>N H<br>O<br>N H<br>O<br>14<br>Phenoxazine derivatives produced by the fusion of the benzo group at ‘a’<br>position or 1, 2 bonds have been reported; 1518,1613 and 1719 which have been<br>used as dyestuff20 and good indicators21. They have been shown to exhibit<br>anticancer22, 23 and antibacterial activities24.<br>N H<br>Me2N O<br>KO3S SO3K<br>15<br>HCl<br>N H<br>O N+Et2N H2<br>Cl-<br>16<br>5<br>17<br>N H<br>N O + NHR3<br>HO<br>R<br>R<br>Replacement of one of the ring carbon atoms of angular phenoxazine analogues<br>with heteroatom such as oxygen, gives phenoxazines called<br>pyranophenoxazines13: 18, 19.<br>18<br>N H<br>O<br>O<br>N H<br>O<br>O<br>O<br>Cl<br>19<br>Variations in phenoxazines ring system because of replacement of one or<br>more CH groups by annular nitrogen have given rise to monoaza 20, diaza 21,<br>and triaza 22 analogues of phenoxazines. Compounds in each of these aza family<br>have been synthesized and reported25.<br>20<br>N<br>O<br>N<br>O<br>N N<br>H<br>O+ OH<br>21<br>6<br>22<br>N<br>N<br>N H<br>O<br>N<br>Some of these aza derivatives have substituents; 23 and 2426.<br>N N<br>O O<br>NH2<br>NHPh<br>N N<br>O O<br>R<br>Cl<br>R = NH2, NO2, NHOAc.<br>23<br>24<br>Several authors have reported cross coupling reactions used for the<br>synthesis of these derivatives27. Such coupling reactions includes Sonogashira<br>cross coupling reaction, Suzuki cross coupling reaction, Stille cross coupling<br>reaction, Buchwald-Hartwig cross coupling reaction and Heck-Mozoroki cross<br>coupling reaction. The discovery of these cross-coupling reactions constitutes<br>one of the most striking breakthroughs in organic chemistry, and it has brought<br>many benefits to organic chemists:<br>· It is extremely powerful and a general strategy for the formation of C – C<br>and C – hetero aromatic bonds.<br>7<br>· It has changed the methodology for the retro synthesis enabling the<br>Organic Chemists to shorten the synthetic procedure27,28<br>· The reaction has gained wide use in synthetic organic chemistry finding<br>application in many total synthesis and industrial preparation of numerous<br>pharmaceuticals 27, 29.<br>Several transition metal catalysts have been developed in response to the<br>increasing demand of these coupled products in chemical pharmaceutical<br>industries. The sole aim is to exert the highest turnover frequency27,28. Literature<br>has shown that palladium catalyzed cross coupling reactions and the Hartwig-<br>Buchwald coupling are the most frequently used routes for the formation of<br>carbon hetero aromatics bond 28. Buchwald group developed a series of catalyst<br>based butyl electron rich phosphine ligands that have attracted much attention<br>due to their ability to affect various C – C, C – N and C –O bond formation28.<br>Prominent amongst these are 2-(dicyclohexylphosphino)-2, 4, 6-<br>triisopropylbiphenyl(Xphos), 2-ditertiarybutylphosphino-1,2,3-triisopropyl<br>biphenyl(t-Buxphos), 2-dicyclohexylphosphino-21, 61-dimethoxybiphenyl<br>(Sphos), 2-dicyclohexylphosphino-21, 61-diisopropoxylbiphenyl(Ruphos) and 2-<br>(dicyclohexylphosphino)-3,6-dimethoxyl-21,41,61-triisopropyl-11,11-biphenyl<br>(Brettphos). Dialkylbiarylphosphine ligands and the pre catalysts derived from<br>them are commonly referred to as Buchwald ligands and pre catalysts<br>8<br>respectively. These reagents have developed into a highly valuable class of<br>compounds for palladium-catalysed reactions, and can be used for a broad range<br>of reactions. Palladium catalysed cross-coupling reactions have been tools for<br>C-C and C-heteroatom bond formation in academic and industrial settings 30, 31.<br>However, palladium sources can have significant problems in generating active<br>catalyst32. For example, stable Pd (0) sources such as Pdn(dba) contains<br>dibenzyldeneacetone (dba) ligands that can impede the catalytic cycle. These Pd<br>species can also contain varying degrees of free dba and palladium nanoparticles<br>33. As researchers explore cross-coupling reactions that are more complex, the<br>method for generation of the catalytically active LnPd (0) species has often<br>proven to be vital to the success of cross-coupling reactions 32. Pd (II) sources<br>such as Pd (OAc) 2 and PdCl2 need to be reduced to Pd (0) in situ before entering<br>a Pd (0) – Pd (II) cross-coupling cycle. The palladium (II) sources are usually<br>reduced using ligands. t-Buxphos has been found to be excellent supporting<br>ligand for pd-catalyzed C – O bond forming reactions33 due to the presence of<br>monophosphine in the structure. Consequently, Buchwald catalyst, which is<br>combination of palladium complex and Buchwald ligand (t-Buxphos), was used<br>in this study.<br>9<br>1.2 Statement of problem<br>Although a wide range of linear and angular phenoxazine compounds<br>have been synthesized, only a limited number of their derivatives have been<br>prepared. Furthermore, their biological activities are understudied. Because of<br>this, parent phenoxazine 1 has been continuously modified in this direction to<br>open new area of application.<br>N<br>O<br>1<br>Benzo[a]phenoxazine 26 and diazabenzo[a]phenoxazine nucleus 25 have<br>been known for years but their chemistry remains poorly developed 34<br>N<br>N<br>N<br>O O<br>Cl<br>NH2<br>HS<br>25<br>Still more grossly under studied is the O-arylated angular phenoxazines.<br>Before now, no significant work has been done using Buchwald catalyst to Oarylate<br>diazaphenoxazine and related carbocyclic analogue. Interest in this type<br>of ring system made us to synthesize twelve new phenoxazines nucleus, which<br>are O-arylated using Buchwald catalyst.<br>N<br>O O<br>26 Cl<br>10<br>1.3 Objectives of the study<br>The objectives of this work therefore are to<br>· Synthesize angular diazaphenoxazine and related carbocyclic<br>analogue compound of the type 2 and 3.<br>N<br>N<br>N<br>O O<br>NH2<br>HS<br>Cl<br>N<br>O O<br>25 26 Cl<br>· O-Arylate the angular diazaphenoxazine and the related carbocyclic<br>analogue using Buchwald catalyst as shown below:<br>N<br>N<br>N<br>O O<br>Cl<br>NH2<br>HS N<br>N<br>N<br>O O<br>NH2<br>O<br>HS<br>OH<br>+ X<br>X<br>Pd(OAc)2 / L<br>k3PO4<br>toluene, 110 0c<br>H2O, 8hrs<br>25 27<br>28<br>11<br>N<br>O<br>Cl<br>O<br>+<br>OH<br>x<br>N<br>O<br>O<br>O<br>x<br>Pd(OAc)2/L<br>K3PO4<br>Toluene,110oc<br>H2O,8hrs<br>26 27<br>29<br>X = H, Me, isopropyl, methoxy, chlorine, and benzene ring<br>L = t-Buxphos.<br>· Characterize the compounds synthesized using UV, IR and NMR<br>spectrophotometer.<br>· Carry out antimicrobial screening on the new phenoxazine scaffold.<br>1.4 Justification for the study<br>The study provides new and facile route of making novel polycyclic ring<br>systems thereby extending methods available for obtaining phenoxazine<br>derivatives. Thus, it generates new area for further research. The newly<br>synthesized compounds could be useful as potent antimicrobial agents in<br>medicine and may be used as dyes in the industries since they show absorption<br>in UV-visible region. <br></p>

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