Aestivation induction and evidence of conformational differences between oxy-haemocyanin and deoxy-haemocyaninin aestivating and non-aestivating snails | Blazingprojects Postgraduate Thesis
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Aestivation induction and evidence of conformational differences between oxy-haemocyanin and deoxy-haemocyaninin aestivating and non-aestivating snails

 

Table Of Contents


Chapter ONE

INTRODUCTION

  • 1.1Introduction
  • 1.2Background of Study
  • 1.3Problem Statement
  • 1.4Objective of Study
  • 1.5Limitation of Study
  • 1.6Scope of Study
  • 1.7Significance of Study
  • 1.8Structure of the Research
  • 1.9Definition of Terms

Chapter TWO

LITERATURE REVIEW

  • 2.1Overview of Haemocyanin
  • 2.2Aestivation in Snails
  • 2.3Conformational Changes in Proteins
  • 2.4Previous Studies on Aestivation
  • 2.5Oxy-Haemocyanin and Deoxy-Haemocyanin
  • 2.6Molecular Dynamics of Haemocyanin
  • 2.7Structural Differences in Aestivating Snails
  • 2.8Impact of Aestivation on Protein Structure
  • 2.9Role of Haemocyanin in Snail Aestivation
  • 2.10Comparative Analysis of Haemocyanin Forms

Chapter THREE

RESEARCH METHODOLOGY

  • 3.1Research Methodology Overview
  • 3.2Selection of Snail Species
  • 3.3Sample Collection and Preparation
  • 3.4Protein Extraction and Analysis
  • 3.5Spectroscopic Techniques Used
  • 3.6Molecular Dynamics Simulation Methods
  • 3.7Data Analysis and Interpretation
  • 3.8Statistical Analysis

Chapter FOUR

DATA PRESENTATION AND ANALYSIS

  • 4.1Interpretation of Spectroscopic Data
  • 4.2Comparison of Protein Structures
  • 4.3Molecular Dynamics Simulation Results
  • 4.4Correlation of Findings with Previous Studies
  • 4.5Discussion on Conformational Changes
  • 4.6Implications of Differences in Haemocyanin Forms
  • 4.7Significance of Findings in Aestivation Research
  • 4.8Future Research Directions

Chapter FIVE

SUMMARY, CONCLUSION AND RECOMMENDATIONS

  • 5.1Summary of Findings
  • 5.2Conclusion and Recommendations
  • 5.3Contribution to Aestivation Studies
  • 5.4Limitations and Areas for Future Research
  • 5.5Final Remarks

Thesis Abstract

ABSTRACT

Haemocyanin is a high molecular weight, dioxygen, transport, copper-glycoprotein with a di-copper active site found in the haemolymph of several marine and terrestrial invertebrates belonging to the phyla Mollusca and Arthropoda. Haemocyanin exists in two distinct conformers the T-conformer (Tense) and the R-conformer (Relaxed).Knowledge of the molecular architecture around the copper atoms in the active site of haemocyanin is important in understanding how these proteins reversibly bind oxygen. Induction of aestivation and the evidence of conformational differences between oxy-haemocyanin and deoxy-haemocyanin in aestivating and non-aestivating snails was studied.Aestivation induction was studied by treating five groups of snails (groups A, B, C, D and E) with respective volumes of oxy-haemocyanin from aestivating snails, respective volumes of oxy-haemocyanin from non-aestivating snails and respective volumes of distilled water. Evidence of conformational differences between oxy-haemocyanin and deoxy-haemocyanin was also studied by treating the haemolymph of two snail samples (Snail 1 and Snail 2) with nitrogen gas.After the induction of aestivation, it was observed that the snails in groups A, B and C administered with the respective volumes of haemolymph extracted from aestivating rsnails began to synthesize epiphragm layer on the 4th day after injection, on the 5th day after injection, the epiphragm layer was completely formed. Whereas the snails in groups D and E began to synthesize epiphragm layer on the 5th day, on the 6th day, the epiphragm layer was completely formed. It was also observed that the snails in groups A, B and C that were injected with haemolymph extracted from non-aestivating snails beganto synthesize epiphragm layer on the 4th day, on the 5th day, the epiphragm layer was completely formed. It was also observed that the snails in groups D and E that were injected with different volumes of water, began to synthesize epiphragm layer on the 3rd day, at about 4 days and 8hours after injection, the epiphragm layer was completely formed. Whereas the snails in groups A, B and C began to synthesize epiphragm layer on the 4th day, at about 5 days after injection, the epiphragm layer was completely formed. Results from the UV-Visible scanning showed that oxyhaemocyanin exhibited spectral activity both in the near-UV region and in the mid-UV region, whereas deoxyhaemocyanin only showed spectral activity in the near-UV region.


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